This Xenium spatial transcriptomics dataset includes over 1.7 million cells in total from from the small intestine of 9 mice across spanning 5 different conditions (WT naive, Germ-free naive, and WT mice infected with Yersinia pseudotuberculosis, Cryptosporidum parvum, or Nippostrongylus brasiliensis). All tissues were prepared as swiss rolls.
Clicking the button below will lauch a custom instance of CELLxGENE. Note cell numbers have not been downsampled.
